checkCIF/PLATON report (publication check)
No syntax errors found. CIF dictionary
Please wait while processing .... Interpreting this report
Datablock: 9004121
| Bond precision: |
= 0.0000 A |
Wavelength=0.71073 |
| Cell: |
a=6.86100 |
b=8.98700 |
c=5.04500 |
|
alpha=90 |
beta=90 |
gamma=90 |
|
Calculated |
Reported |
| Volume |
311.07 |
311 |
| Space group |
Pmnb |
P m n b |
| Hall group |
-P 2bc 2a |
? |
| Moiety formula |
Ca0.04 Fe3.60 Mg0.12 Mn0.24 O16 P4, 4(Na)
|
? |
| Sum formula |
Ca0.04 Fe3.60 Mg0.12 Mn0.24 Na4 O16 P4
|
NA (FE.9 MN.06 MG.03 CA.01) P O4
|
| Mr |
690.61 |
0.00
|
| Dx,g cm-3 |
3.687 |
0.000
|
| Z |
1 |
0
|
| Mu (mm-1) |
5.138 |
0.000
|
| F000 |
333.8 |
0.0 |
| F000' |
335.85
|
|
| h,k,lmax |
|
|
| Nref |
|
|
| Tmin,Tmax |
|
|
| Tmin' |
|
|
| Correction method= Not given |
|
| Data completeness= |
Theta(max)= |
| R(reflections)= |
wR2(reflections)= |
The following ALERTS were generated. Each ALERT has the format
test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.
Alert level A
CHEM003_ALERT_1_A _chemical_formula_weight is missing
Chemical formula mass (Da).
The following tests will not be performed.
CHEMW_01,CHEMW_02,CHEMW_03,DENSD_01
SYMM001_ALERT_1_A _symmetry_cell_setting is missing
The cell setting should be one of the following
* triclinic
* monoclinic
* orthorhombic
* tetragonal
* rhombohedral
* trigonal
* hexagonal
* cubic
The following tests will not be performed.
SYMMS_01,SYMMS_02
CELL002_ALERT_1_A _cell_formula_units_Z is missing
Number of formulae per unit cell.
The following tests will not be performed.
ABSMU_01,CELLZ_01,DENSD_01
EXPT001_ALERT_1_A _exptl_crystal_density_diffrn is missing
Density calculated from unit cell and contents (Mg m-3).
The following tests will not be performed.
DENSD_01,DENSX_01
DIFF001_ALERT_1_A _diffrn_radiation_type is missing
The radiation type should contain one of the following
* 'Cu K\a'
* 'Mo K\a'
* 'Ag K\a'
* neutron
* synchrotron
The following tests will not be performed.
ABSMU_01,ABSTM_02,CRYSS_01,RADNW_01
DIFF002_ALERT_1_A _diffrn_radiation_wavelength is missing
Radiation wavelength (A).
The following tests will not be performed.
RADNW_01,REFLT_03,REFNR_01,THETM_01
CELL003_ALERT_1_A _cell_measurement_reflns_used is missing
Number of reflections used to measure unit cell.
CELL004_ALERT_1_A _cell_measurement_theta_min is missing
Minimum theta of reflections used to measure unit cell.
The following tests will not be performed.
CELLT_01
CELL005_ALERT_1_A _cell_measurement_theta_max is missing
Maximum theta of reflections used to measure unit cell.
The following tests will not be performed.
CELLT_01
CELL006_ALERT_1_A _cell_measurement_temperature is missing
Measurement temperature (K).
The following tests will not be performed.
CELLK_01
EXPT004_ALERT_1_A _exptl_absorpt_coefficient_mu is missing
Linear absorption coefficient (mm-1).
The following tests will not be performed.
ABSMU_01,ABSTM_02
EXPT005_ALERT_1_A _exptl_crystal_description is missing
Crystal habit description.
The following tests will not be performed.
CRYSR_01
EXPT009_ALERT_1_A No crystal dimensions have been given.
The following tests will not be performed.
CRYSS_01,CRYSS_02
EXPT108_ALERT_1_A The magnitudes of the crystal dimensions do not
match the min, mid and max definitions
EXPT010_ALERT_1_A _exptl_crystal_colour (_pd_char_colour for powder) is missing
Crystal colour.
The following tests will not be performed.
CRYSC_01
DIFF003_ALERT_1_A _diffrn_measurement_device_type is missing
Diffractometer make and type. Replaces _diffrn_measurement_type.
DIFF005_ALERT_1_A _diffrn_measurement_method is missing
Mode of intensity measurement and scan.
DIFF007_ALERT_1_A _diffrn_reflns_number is missing
Total number of reflections measured.
The following tests will not be performed.
REFLG_01,REFLT_01
REFL001_ALERT_1_A _reflns_number_total is missing
Number of symmetry-independent reflections.
The following tests will not be performed.
REFLT_01,REFLT_02,REFLT_03,REFNR_01
REFL002_ALERT_1_A _reflns_number_gt is missing
Number of reflections > sigma threshold.
The following tests will not be performed.
REFLG_01,REFLT_02
REFL004_ALERT_1_A _reflns_threshold_expression is missing
Sigma expression for F, F2 or I threshold.
The following tests will not be performed.
REFLE_01
DIFF008_ALERT_1_A _diffrn_reflns_theta_max is missing
Maximum theta of measured reflections.
The following tests will not be performed
REFLT_03,REFNR_01,THETM_01
DIFF013_ALERT_1_A _diffrn_reflns_limit_h_min is missing
Minimum h index of measured data.
The following tests will not be performed
REFLL_01
DIFF014_ALERT_1_A _diffrn_reflns_limit_h_max is missing
Maximum h index of measured data.
The following tests will not be performed
REFLL_01
DIFF015_ALERT_1_A _diffrn_reflns_limit_k_min is missing
Minimum k index of measured data.
The following tests will not be performed
REFLL_01
DIFF016_ALERT_1_A _diffrn_reflns_limit_k_max is missing
Maximum k index of measured data.
The following tests will not be performed
REFLL_01
DIFF017_ALERT_1_A _diffrn_reflns_limit_l_min is missing
Minimum l index of measured data.
The following tests will not be performed
REFLL_01
DIFF018_ALERT_1_A _diffrn_reflns_limit_l_max is missing
Maximum l index of measured data.
The following tests will not be performed
REFLL_01
DIFF019_ALERT_1_A _diffrn_standards_number is missing
Number of standards used in measurement.
DIFF020_ALERT_1_A _diffrn_standards_interval_count and
_diffrn_standards_interval_time are missing. Number of measurements
between standards or time (min) between standards.
DIFF022_ALERT_1_A _diffrn_standards_decay_% is missing
Percentage decrease in standards intensity.
REFI001_ALERT_1_A _refine_ls_structure_factor_coef is missing
The structure factor coefficient should be one of the following
* Inet
* Fsqd
* F
The following tests will not be performed
FCOEF_01
REFI003_ALERT_1_A _refine_ls_R_factor_gt is missing
R factor of F for reflections > threshold.
The following tests will not be performed
RFACG_01
REFI005_ALERT_1_A _refine_ls_wR_factor_ref is missing
R factor of coefficient for refinement reflections.
The following tests will not be performed
RFACR_01
REFI007_ALERT_1_A _refine_ls_goodness_of_fit_ref is missing
Goodness of fit S for refinement reflections.
The following tests will not be performed
GOODF_01
REFI009_ALERT_1_A _refine_ls_number_reflns is missing
Number of reflections used in refinement.
The following test will not be performed
REFNR_01
REFI010_ALERT_1_A _refine_ls_number_parameters is missing
Number of parameters refined.
The following tests will not be performed
REFNR_01
REFI011_ALERT_1_A _refine_ls_weighting_scheme is missing
The weighting scheme should be one of the following
* sigma
* calc
The following tests will not be performed
WEIGH_01
REFI015_ALERT_1_A _refine_ls_shift/su_max is missing
Maximum shift/s.u. ratio after final refinement cycle.
The following tests will not be performed
SHFSU_01
REFI017_ALERT_1_A _refine_diff_density_max is missing
Maximum value of final difference map (e A-3).
The following tests will not be performed
DIFMN_01,DIFMX_01,DIFMX_02
REFI018_ALERT_1_A _refine_diff_density_min is missing
Minimum value of final difference map (e A-3).
The following tests will not be performed
DIFMN_01,DIFMN_02,DIFMN_03
ATOM006_ALERT_1_A _atom_site_U_iso_or_equiv is missing
Isotropic atomic displacement paramter, or equivalent from
anisotropic atomic displacement parameters.
ATOM007_ALERT_1_A _atom_site_aniso_label is missing
Unique label identifying the atom site.
GEOM001_ALERT_1_A _geom_bond_atom_site_label_1 is missing
Label identifying the atom site 1.
GEOM003_ALERT_1_A _geom_bond_distance is missing
Distance between atom sites 1 and 2.
GEOM006_ALERT_1_A _geom_angle_atom_site_label_2 is missing
Label identifying the atom site 2.
ABSTY01_ALERT_1_A The absorption correction should be one of the following
* none
* analytical
* integration
* numerical
* gaussian
* empirical
* psi-scan
* multi-scan
* refdelf
* sphere
* cylinder
PLAT025_ALERT_1_A Hmin..Lmax Data Incomplete or Missing .......... ?
PLAT027_ALERT_3_A _diffrn_reflns_theta_full (too) Low ............ 0.00 Deg.
PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ....... 0.00
PLAT043_ALERT_1_A Check Reported Molecular Weight ................ 0.00
PLAT044_ALERT_1_A Calculated and Reported Dx Differ .............. ?
PLAT050_ALERT_1_A Absorption Coefficient mu Missing .............. ?
PLAT081_ALERT_1_A No Maximum Shift/Error Given ................... ?
PLAT086_ALERT_2_A Unsatisfactory S Value (Too Low or Not Given) .. 0.00
PLAT197_ALERT_1_A Missing _cell_measurement_temperature .......... ?
Alert level B
CHEMS01_ALERT_1_B The sum formula contains an invalid character.
WARNING - The character ( is not allowed in the _chemical_formula_su
CHEMS01_ALERT_1_B The sum formula contains an invalid character.
WARNING - The character ) is not allowed in the _chemical_formula_su
CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order.
Na precedes Fe
Sequence must be C, H, then alphabetical.
CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order.
Mn precedes Mg
Sequence must be C, H, then alphabetical.
CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order.
Mg precedes Ca
Sequence must be C, H, then alphabetical.
CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order.
P precedes O
Sequence must be C, H, then alphabetical.
Alert level C
ABSTY02_ALERT_1_C An _exptl_absorpt_correction_type has been given without
a literature citation. This should be contained in the
_exptl_absorpt_process_details field.
Absorption correction given as Not Given
PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ?
PLAT045_ALERT_1_C Calculated and Reported Z Differ by ............ 0.00 Ratio
PLAT077_ALERT_4_C Unitcell contains non-integer number of atoms .. ?
PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ?
PLAT128_ALERT_4_C Non-standard setting of Space group Pnma .... Pmnb
PLAT141_ALERT_4_C su on a - Axis Small or Missing (x 100000) ..... 0 Ang.
PLAT142_ALERT_4_C su on b - Axis Small or Missing (x 100000) ..... 0 Ang.
PLAT143_ALERT_4_C su on c - Axis Small or Missing (x 100000) ..... 0 Ang.
PLAT151_ALERT_1_C No su (esd) Given on Volume .................... ?
PLAT161_ALERT_4_C Missing or Zero su (esd) on x-coordinate for ... O3
PLAT162_ALERT_4_C Missing or Zero su (esd) on y-coordinate for ... O3
PLAT163_ALERT_4_C Missing or Zero su (esd) on z-coordinate for ... O3
PLAT202_ALERT_3_C Isotropic non-H Atoms in Anion/Solvent ......... 1
PLAT301_ALERT_3_C Main Residue Disorder ......................... 18.00 Perc.
56 ALERT level A = In general: serious problem
6 ALERT level B = Potentially serious problem
15 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
63 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
4 ALERT type 3 Indicator that the structure quality may be low
9 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
checkCIF publication errors
Alert level A
PUBL004_ALERT_1_A The contact author's name and address are missing,
_publ_contact_author_name and _publ_contact_author_address.
PUBL005_ALERT_1_A _publ_contact_author_email, _publ_contact_author_fax and
_publ_contact_author_phone are all missing.
At least one of these should be present.
PUBL006_ALERT_1_A _publ_requested_journal is missing
e.g. 'Acta Crystallographica Section C'
PUBL010_ALERT_1_A _publ_author_address is missing. Author(s) address(es).
PUBL012_ALERT_1_A _publ_section_abstract is missing.
Abstract of paper in English.
PUBL016_ALERT_1_A Details of the refinement are missing.
e.g. _publ_section_exptl_refinement
_computing_data_collection
_computing_cell_refinement , etc.
ATOM001_ALERT_1_A _atom_type_scat_source is missing
Reference to scattering factors applied.
Alert level G
PUBL013_ALERT_1_G The _publ_section_comment (discussion of study) is
missing. This is required for a full paper submission (but is
optional for an electronic paper).
PUBL017_ALERT_1_G The _publ_section_references section is missing or
empty.
7 ALERT level A = Data missing that is essential or data in wrong format
2 ALERT level G = General alerts. Data that may be required is missing
|
Publication of your CIF
You should always attempt to resolve as many as possible of the
alerts in all categories. Often the minor alerts point to easily fixed
oversights, errors and omissions in your CIF or refinement strategy, so
attention to these fine details can be worthwhile. In order to resolve some
of the more serious problems it may be necessary to carry out additional
measurements or structure refinements. However, the nature of your study may
justify the reported deviations from the submission requirements of the
journal and these should be commented upon in the discussion or experimental
section of a paper - after all, they might represent an interesting feature.
If level A alerts remain, which you believe to be justified deviations, and
you intend to submit this CIF for publication in Acta Crystallographica
Section C or Section E, you should additionally insert an explanation in your CIF using the
Validation Reply Form (VRF) below. Your explanation will be considered
as part of the review process.
If you intend to submit to another section of Acta Crystallographica or
Journal of Applied Crystallography or Journal of Synchrotron Radiation,
you should make sure that at least a
basic structural check is run on the
final version of your CIF prior to submission.
|
# start Validation Reply Form
_vrf_PUBL004_GLOBAL
;
PROBLEM: The contact author's name and address are missing,
RESPONSE: ...
;
_vrf_PUBL005_GLOBAL
;
PROBLEM: _publ_contact_author_email, _publ_contact_author_fax and
RESPONSE: ...
;
_vrf_PUBL006_GLOBAL
;
PROBLEM: _publ_requested_journal is missing
RESPONSE: ...
;
_vrf_PUBL010_GLOBAL
;
PROBLEM: _publ_author_address is missing. Author(s) address(es).
RESPONSE: ...
;
_vrf_PUBL012_GLOBAL
;
PROBLEM: _publ_section_abstract is missing.
RESPONSE: ...
;
_vrf_PUBL016_GLOBAL
;
PROBLEM: Details of the refinement are missing.
RESPONSE: ...
;
_vrf_ATOM001_GLOBAL
;
PROBLEM: _atom_type_scat_source is missing
RESPONSE: ...
;
_vrf_CHEM003_9004121
;
PROBLEM: _chemical_formula_weight is missing
RESPONSE: ...
;
_vrf_SYMM001_9004121
;
PROBLEM: _symmetry_cell_setting is missing
RESPONSE: ...
;
_vrf_CELL002_9004121
;
PROBLEM: _cell_formula_units_Z is missing
RESPONSE: ...
;
_vrf_EXPT001_9004121
;
PROBLEM: _exptl_crystal_density_diffrn is missing
RESPONSE: ...
;
_vrf_DIFF001_9004121
;
PROBLEM: _diffrn_radiation_type is missing
RESPONSE: ...
;
_vrf_DIFF002_9004121
;
PROBLEM: _diffrn_radiation_wavelength is missing
RESPONSE: ...
;
_vrf_CELL003_9004121
;
PROBLEM: _cell_measurement_reflns_used is missing
RESPONSE: ...
;
_vrf_CELL004_9004121
;
PROBLEM: _cell_measurement_theta_min is missing
RESPONSE: ...
;
_vrf_CELL005_9004121
;
PROBLEM: _cell_measurement_theta_max is missing
RESPONSE: ...
;
_vrf_CELL006_9004121
;
PROBLEM: _cell_measurement_temperature is missing
RESPONSE: ...
;
_vrf_EXPT004_9004121
;
PROBLEM: _exptl_absorpt_coefficient_mu is missing
RESPONSE: ...
;
_vrf_EXPT005_9004121
;
PROBLEM: _exptl_crystal_description is missing
RESPONSE: ...
;
_vrf_EXPT009_9004121
;
PROBLEM: No crystal dimensions have been given.
RESPONSE: ...
;
_vrf_EXPT108_9004121
;
PROBLEM: The magnitudes of the crystal dimensions do not
RESPONSE: ...
;
_vrf_EXPT010_9004121
;
PROBLEM: _exptl_crystal_colour (_pd_char_colour for powder) is missing
RESPONSE: ...
;
_vrf_DIFF003_9004121
;
PROBLEM: _diffrn_measurement_device_type is missing
RESPONSE: ...
;
_vrf_DIFF005_9004121
;
PROBLEM: _diffrn_measurement_method is missing
RESPONSE: ...
;
_vrf_DIFF007_9004121
;
PROBLEM: _diffrn_reflns_number is missing
RESPONSE: ...
;
_vrf_REFL001_9004121
;
PROBLEM: _reflns_number_total is missing
RESPONSE: ...
;
_vrf_REFL002_9004121
;
PROBLEM: _reflns_number_gt is missing
RESPONSE: ...
;
_vrf_REFL004_9004121
;
PROBLEM: _reflns_threshold_expression is missing
RESPONSE: ...
;
_vrf_DIFF008_9004121
;
PROBLEM: _diffrn_reflns_theta_max is missing
RESPONSE: ...
;
_vrf_DIFF013_9004121
;
PROBLEM: _diffrn_reflns_limit_h_min is missing
RESPONSE: ...
;
_vrf_DIFF014_9004121
;
PROBLEM: _diffrn_reflns_limit_h_max is missing
RESPONSE: ...
;
_vrf_DIFF015_9004121
;
PROBLEM: _diffrn_reflns_limit_k_min is missing
RESPONSE: ...
;
_vrf_DIFF016_9004121
;
PROBLEM: _diffrn_reflns_limit_k_max is missing
RESPONSE: ...
;
_vrf_DIFF017_9004121
;
PROBLEM: _diffrn_reflns_limit_l_min is missing
RESPONSE: ...
;
_vrf_DIFF018_9004121
;
PROBLEM: _diffrn_reflns_limit_l_max is missing
RESPONSE: ...
;
_vrf_DIFF019_9004121
;
PROBLEM: _diffrn_standards_number is missing
RESPONSE: ...
;
_vrf_DIFF020_9004121
;
PROBLEM: _diffrn_standards_interval_count and
RESPONSE: ...
;
_vrf_DIFF022_9004121
;
PROBLEM: _diffrn_standards_decay_% is missing
RESPONSE: ...
;
_vrf_REFI001_9004121
;
PROBLEM: _refine_ls_structure_factor_coef is missing
RESPONSE: ...
;
_vrf_REFI003_9004121
;
PROBLEM: _refine_ls_R_factor_gt is missing
RESPONSE: ...
;
_vrf_REFI005_9004121
;
PROBLEM: _refine_ls_wR_factor_ref is missing
RESPONSE: ...
;
_vrf_REFI007_9004121
;
PROBLEM: _refine_ls_goodness_of_fit_ref is missing
RESPONSE: ...
;
_vrf_REFI009_9004121
;
PROBLEM: _refine_ls_number_reflns is missing
RESPONSE: ...
;
_vrf_REFI010_9004121
;
PROBLEM: _refine_ls_number_parameters is missing
RESPONSE: ...
;
_vrf_REFI011_9004121
;
PROBLEM: _refine_ls_weighting_scheme is missing
RESPONSE: ...
;
_vrf_REFI015_9004121
;
PROBLEM: _refine_ls_shift/su_max is missing
RESPONSE: ...
;
_vrf_REFI017_9004121
;
PROBLEM: _refine_diff_density_max is missing
RESPONSE: ...
;
_vrf_REFI018_9004121
;
PROBLEM: _refine_diff_density_min is missing
RESPONSE: ...
;
_vrf_ATOM006_9004121
;
PROBLEM: _atom_site_U_iso_or_equiv is missing
RESPONSE: ...
;
_vrf_ATOM007_9004121
;
PROBLEM: _atom_site_aniso_label is missing
RESPONSE: ...
;
_vrf_GEOM001_9004121
;
PROBLEM: _geom_bond_atom_site_label_1 is missing
RESPONSE: ...
;
_vrf_GEOM003_9004121
;
PROBLEM: _geom_bond_distance is missing
RESPONSE: ...
;
_vrf_GEOM006_9004121
;
PROBLEM: _geom_angle_atom_site_label_2 is missing
RESPONSE: ...
;
_vrf_ABSTY01_9004121
;
PROBLEM: The absorption correction should be one of the following
RESPONSE: ...
;
_vrf_PLAT025_9004121
;
PROBLEM: Hmin..Lmax Data Incomplete or Missing .......... ?
RESPONSE: ...
;
_vrf_PLAT027_9004121
;
PROBLEM: _diffrn_reflns_theta_full (too) Low ............ 0.00 Deg.
RESPONSE: ...
;
_vrf_PLAT029_9004121
;
PROBLEM: _diffrn_measured_fraction_theta_full Low ....... 0.00
RESPONSE: ...
;
_vrf_PLAT043_9004121
;
PROBLEM: Check Reported Molecular Weight ................ 0.00
RESPONSE: ...
;
_vrf_PLAT044_9004121
;
PROBLEM: Calculated and Reported Dx Differ .............. ?
RESPONSE: ...
;
_vrf_PLAT050_9004121
;
PROBLEM: Absorption Coefficient mu Missing .............. ?
RESPONSE: ...
;
_vrf_PLAT081_9004121
;
PROBLEM: No Maximum Shift/Error Given ................... ?
RESPONSE: ...
;
_vrf_PLAT086_9004121
;
PROBLEM: Unsatisfactory S Value (Too Low or Not Given) .. 0.00
RESPONSE: ...
;
_vrf_PLAT197_9004121
;
PROBLEM: Missing _cell_measurement_temperature .......... ?
RESPONSE: ...
;
# end Validation Reply Form
|
If you wish to submit your CIF for publication in Acta
Crystallographica Section C or E, you should upload your CIF via
the web.
If your CIF is to form part of a submission to another
IUCr journal, you will be asked, either during electronic submission or
by the Co-editor handling your paper, to upload your CIF via our web site.
|
PLATON version of 23/04/2007; check.def file version of 23/04/2007
| Datablock 9004121 - ellipsoid plot |
|
Download CIF editor (enCIFer) from the CCDC
Test a new CIF entry