checkCIF/PLATON report (publication check)

No syntax errors found.                               CIF dictionary
Please wait while processing .... Interpreting this report
Datablock: 9004121
Bond precision: = 0.0000 A Wavelength=0.71073
Cell: a=6.86100 b=8.98700 c=5.04500
alpha=90 beta=90 gamma=90
Calculated Reported
Volume 311.07 311
Space group Pmnb P m n b
Hall group -P 2bc 2a ?
Moiety formula Ca0.04 Fe3.60 Mg0.12 Mn0.24 O16 P4, 4(Na) ?
Sum formula Ca0.04 Fe3.60 Mg0.12 Mn0.24 Na4 O16 P4 NA (FE.9 MN.06 MG.03 CA.01) P O4
Mr 690.61 0.00
Dx,g cm-3 3.687 0.000
Z 1 0
Mu (mm-1) 5.138 0.000
F000 333.8 0.0
F000' 335.85
h,k,lmax
Nref
Tmin,Tmax
Tmin'
Correction method= Not given
Data completeness= Theta(max)=
R(reflections)= wR2(reflections)=
S = Npar=

The following ALERTS were generated. Each ALERT has the format
       test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.

Alert level A CHEM003_ALERT_1_A _chemical_formula_weight is missing Chemical formula mass (Da). The following tests will not be performed. CHEMW_01,CHEMW_02,CHEMW_03,DENSD_01 SYMM001_ALERT_1_A _symmetry_cell_setting is missing The cell setting should be one of the following * triclinic * monoclinic * orthorhombic * tetragonal * rhombohedral * trigonal * hexagonal * cubic The following tests will not be performed. SYMMS_01,SYMMS_02 CELL002_ALERT_1_A _cell_formula_units_Z is missing Number of formulae per unit cell. The following tests will not be performed. ABSMU_01,CELLZ_01,DENSD_01 EXPT001_ALERT_1_A _exptl_crystal_density_diffrn is missing Density calculated from unit cell and contents (Mg m-3). The following tests will not be performed. DENSD_01,DENSX_01 DIFF001_ALERT_1_A _diffrn_radiation_type is missing The radiation type should contain one of the following * 'Cu K\a' * 'Mo K\a' * 'Ag K\a' * neutron * synchrotron The following tests will not be performed. ABSMU_01,ABSTM_02,CRYSS_01,RADNW_01 DIFF002_ALERT_1_A _diffrn_radiation_wavelength is missing Radiation wavelength (A). The following tests will not be performed. RADNW_01,REFLT_03,REFNR_01,THETM_01 CELL003_ALERT_1_A _cell_measurement_reflns_used is missing Number of reflections used to measure unit cell. CELL004_ALERT_1_A _cell_measurement_theta_min is missing Minimum theta of reflections used to measure unit cell. The following tests will not be performed. CELLT_01 CELL005_ALERT_1_A _cell_measurement_theta_max is missing Maximum theta of reflections used to measure unit cell. The following tests will not be performed. CELLT_01 CELL006_ALERT_1_A _cell_measurement_temperature is missing Measurement temperature (K). The following tests will not be performed. CELLK_01 EXPT004_ALERT_1_A _exptl_absorpt_coefficient_mu is missing Linear absorption coefficient (mm-1). The following tests will not be performed. ABSMU_01,ABSTM_02 EXPT005_ALERT_1_A _exptl_crystal_description is missing Crystal habit description. The following tests will not be performed. CRYSR_01 EXPT009_ALERT_1_A No crystal dimensions have been given. The following tests will not be performed. CRYSS_01,CRYSS_02 EXPT108_ALERT_1_A The magnitudes of the crystal dimensions do not match the min, mid and max definitions EXPT010_ALERT_1_A _exptl_crystal_colour (_pd_char_colour for powder) is missing Crystal colour. The following tests will not be performed. CRYSC_01 DIFF003_ALERT_1_A _diffrn_measurement_device_type is missing Diffractometer make and type. Replaces _diffrn_measurement_type. DIFF005_ALERT_1_A _diffrn_measurement_method is missing Mode of intensity measurement and scan. DIFF007_ALERT_1_A _diffrn_reflns_number is missing Total number of reflections measured. The following tests will not be performed. REFLG_01,REFLT_01 REFL001_ALERT_1_A _reflns_number_total is missing Number of symmetry-independent reflections. The following tests will not be performed. REFLT_01,REFLT_02,REFLT_03,REFNR_01 REFL002_ALERT_1_A _reflns_number_gt is missing Number of reflections > sigma threshold. The following tests will not be performed. REFLG_01,REFLT_02 REFL004_ALERT_1_A _reflns_threshold_expression is missing Sigma expression for F, F2 or I threshold. The following tests will not be performed. REFLE_01 DIFF008_ALERT_1_A _diffrn_reflns_theta_max is missing Maximum theta of measured reflections. The following tests will not be performed REFLT_03,REFNR_01,THETM_01 DIFF013_ALERT_1_A _diffrn_reflns_limit_h_min is missing Minimum h index of measured data. The following tests will not be performed REFLL_01 DIFF014_ALERT_1_A _diffrn_reflns_limit_h_max is missing Maximum h index of measured data. The following tests will not be performed REFLL_01 DIFF015_ALERT_1_A _diffrn_reflns_limit_k_min is missing Minimum k index of measured data. The following tests will not be performed REFLL_01 DIFF016_ALERT_1_A _diffrn_reflns_limit_k_max is missing Maximum k index of measured data. The following tests will not be performed REFLL_01 DIFF017_ALERT_1_A _diffrn_reflns_limit_l_min is missing Minimum l index of measured data. The following tests will not be performed REFLL_01 DIFF018_ALERT_1_A _diffrn_reflns_limit_l_max is missing Maximum l index of measured data. The following tests will not be performed REFLL_01 DIFF019_ALERT_1_A _diffrn_standards_number is missing Number of standards used in measurement. DIFF020_ALERT_1_A _diffrn_standards_interval_count and _diffrn_standards_interval_time are missing. Number of measurements between standards or time (min) between standards. DIFF022_ALERT_1_A _diffrn_standards_decay_% is missing Percentage decrease in standards intensity. REFI001_ALERT_1_A _refine_ls_structure_factor_coef is missing The structure factor coefficient should be one of the following * Inet * Fsqd * F The following tests will not be performed FCOEF_01 REFI003_ALERT_1_A _refine_ls_R_factor_gt is missing R factor of F for reflections > threshold. The following tests will not be performed RFACG_01 REFI005_ALERT_1_A _refine_ls_wR_factor_ref is missing R factor of coefficient for refinement reflections. The following tests will not be performed RFACR_01 REFI007_ALERT_1_A _refine_ls_goodness_of_fit_ref is missing Goodness of fit S for refinement reflections. The following tests will not be performed GOODF_01 REFI009_ALERT_1_A _refine_ls_number_reflns is missing Number of reflections used in refinement. The following test will not be performed REFNR_01 REFI010_ALERT_1_A _refine_ls_number_parameters is missing Number of parameters refined. The following tests will not be performed REFNR_01 REFI011_ALERT_1_A _refine_ls_weighting_scheme is missing The weighting scheme should be one of the following * sigma * calc The following tests will not be performed WEIGH_01 REFI015_ALERT_1_A _refine_ls_shift/su_max is missing Maximum shift/s.u. ratio after final refinement cycle. The following tests will not be performed SHFSU_01 REFI017_ALERT_1_A _refine_diff_density_max is missing Maximum value of final difference map (e A-3). The following tests will not be performed DIFMN_01,DIFMX_01,DIFMX_02 REFI018_ALERT_1_A _refine_diff_density_min is missing Minimum value of final difference map (e A-3). The following tests will not be performed DIFMN_01,DIFMN_02,DIFMN_03 ATOM006_ALERT_1_A _atom_site_U_iso_or_equiv is missing Isotropic atomic displacement paramter, or equivalent from anisotropic atomic displacement parameters. ATOM007_ALERT_1_A _atom_site_aniso_label is missing Unique label identifying the atom site. GEOM001_ALERT_1_A _geom_bond_atom_site_label_1 is missing Label identifying the atom site 1. GEOM003_ALERT_1_A _geom_bond_distance is missing Distance between atom sites 1 and 2. GEOM006_ALERT_1_A _geom_angle_atom_site_label_2 is missing Label identifying the atom site 2. ABSTY01_ALERT_1_A The absorption correction should be one of the following * none * analytical * integration * numerical * gaussian * empirical * psi-scan * multi-scan * refdelf * sphere * cylinder PLAT025_ALERT_1_A Hmin..Lmax Data Incomplete or Missing .......... ? PLAT027_ALERT_3_A _diffrn_reflns_theta_full (too) Low ............ 0.00 Deg. PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ....... 0.00 PLAT043_ALERT_1_A Check Reported Molecular Weight ................ 0.00 PLAT044_ALERT_1_A Calculated and Reported Dx Differ .............. ? PLAT050_ALERT_1_A Absorption Coefficient mu Missing .............. ? PLAT081_ALERT_1_A No Maximum Shift/Error Given ................... ? PLAT086_ALERT_2_A Unsatisfactory S Value (Too Low or Not Given) .. 0.00 PLAT197_ALERT_1_A Missing _cell_measurement_temperature .......... ?
Alert level B CHEMS01_ALERT_1_B The sum formula contains an invalid character. WARNING - The character ( is not allowed in the _chemical_formula_su CHEMS01_ALERT_1_B The sum formula contains an invalid character. WARNING - The character ) is not allowed in the _chemical_formula_su CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order. Na precedes Fe Sequence must be C, H, then alphabetical. CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order. Mn precedes Mg Sequence must be C, H, then alphabetical. CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order. Mg precedes Ca Sequence must be C, H, then alphabetical. CHEMS01_ALERT_1_B The sum formula contains elements in the wrong order. P precedes O Sequence must be C, H, then alphabetical.
Alert level C ABSTY02_ALERT_1_C An _exptl_absorpt_correction_type has been given without a literature citation. This should be contained in the _exptl_absorpt_process_details field. Absorption correction given as Not Given PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ? PLAT045_ALERT_1_C Calculated and Reported Z Differ by ............ 0.00 Ratio PLAT077_ALERT_4_C Unitcell contains non-integer number of atoms .. ? PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT128_ALERT_4_C Non-standard setting of Space group Pnma .... Pmnb PLAT141_ALERT_4_C su on a - Axis Small or Missing (x 100000) ..... 0 Ang. PLAT142_ALERT_4_C su on b - Axis Small or Missing (x 100000) ..... 0 Ang. PLAT143_ALERT_4_C su on c - Axis Small or Missing (x 100000) ..... 0 Ang. PLAT151_ALERT_1_C No su (esd) Given on Volume .................... ? PLAT161_ALERT_4_C Missing or Zero su (esd) on x-coordinate for ... O3 PLAT162_ALERT_4_C Missing or Zero su (esd) on y-coordinate for ... O3 PLAT163_ALERT_4_C Missing or Zero su (esd) on z-coordinate for ... O3 PLAT202_ALERT_3_C Isotropic non-H Atoms in Anion/Solvent ......... 1 PLAT301_ALERT_3_C Main Residue Disorder ......................... 18.00 Perc.
56 ALERT level A = In general: serious problem 6 ALERT level B = Potentially serious problem 15 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 63 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 9 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

checkCIF publication errors

Alert level A PUBL004_ALERT_1_A The contact author's name and address are missing, _publ_contact_author_name and _publ_contact_author_address. PUBL005_ALERT_1_A _publ_contact_author_email, _publ_contact_author_fax and _publ_contact_author_phone are all missing. At least one of these should be present. PUBL006_ALERT_1_A _publ_requested_journal is missing e.g. 'Acta Crystallographica Section C' PUBL010_ALERT_1_A _publ_author_address is missing. Author(s) address(es). PUBL012_ALERT_1_A _publ_section_abstract is missing. Abstract of paper in English. PUBL016_ALERT_1_A Details of the refinement are missing. e.g. _publ_section_exptl_refinement _computing_data_collection _computing_cell_refinement , etc. ATOM001_ALERT_1_A _atom_type_scat_source is missing Reference to scattering factors applied.
Alert level G PUBL013_ALERT_1_G The _publ_section_comment (discussion of study) is missing. This is required for a full paper submission (but is optional for an electronic paper). PUBL017_ALERT_1_G The _publ_section_references section is missing or empty.
7 ALERT level A = Data missing that is essential or data in wrong format 2 ALERT level G = General alerts. Data that may be required is missing

Publication of your CIF

You should always attempt to resolve as many as possible of the alerts in all categories. Often the minor alerts point to easily fixed oversights, errors and omissions in your CIF or refinement strategy, so attention to these fine details can be worthwhile. In order to resolve some of the more serious problems it may be necessary to carry out additional measurements or structure refinements. However, the nature of your study may justify the reported deviations from the submission requirements of the journal and these should be commented upon in the discussion or experimental section of a paper - after all, they might represent an interesting feature.

If level A alerts remain, which you believe to be justified deviations, and you intend to submit this CIF for publication in Acta Crystallographica Section C or Section E, you should additionally insert an explanation in your CIF using the Validation Reply Form (VRF) below. Your explanation will be considered as part of the review process.

If you intend to submit to another section of Acta Crystallographica or Journal of Applied Crystallography or Journal of Synchrotron Radiation, you should make sure that at least a basic structural check is run on the final version of your CIF prior to submission.

# start Validation Reply Form
_vrf_PUBL004_GLOBAL
;
PROBLEM: The contact author's name and address are missing,
RESPONSE: ...
;
_vrf_PUBL005_GLOBAL
;
PROBLEM: _publ_contact_author_email, _publ_contact_author_fax and
RESPONSE: ...
;
_vrf_PUBL006_GLOBAL
;
PROBLEM: _publ_requested_journal is missing
RESPONSE: ...
;
_vrf_PUBL010_GLOBAL
;
PROBLEM: _publ_author_address is missing. Author(s) address(es).
RESPONSE: ...
;
_vrf_PUBL012_GLOBAL
;
PROBLEM: _publ_section_abstract is missing.
RESPONSE: ...
;
_vrf_PUBL016_GLOBAL
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PROBLEM: Details of the refinement are missing.
RESPONSE: ...
;
_vrf_ATOM001_GLOBAL
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PROBLEM: _atom_type_scat_source is missing
RESPONSE: ...
;
_vrf_CHEM003_9004121
;
PROBLEM: _chemical_formula_weight is missing
RESPONSE: ...
;
_vrf_SYMM001_9004121
;
PROBLEM: _symmetry_cell_setting is missing
RESPONSE: ...
;
_vrf_CELL002_9004121
;
PROBLEM: _cell_formula_units_Z is missing
RESPONSE: ...
;
_vrf_EXPT001_9004121
;
PROBLEM: _exptl_crystal_density_diffrn is missing
RESPONSE: ...
;
_vrf_DIFF001_9004121
;
PROBLEM: _diffrn_radiation_type is missing
RESPONSE: ...
;
_vrf_DIFF002_9004121
;
PROBLEM: _diffrn_radiation_wavelength is missing
RESPONSE: ...
;
_vrf_CELL003_9004121
;
PROBLEM: _cell_measurement_reflns_used is missing
RESPONSE: ...
;
_vrf_CELL004_9004121
;
PROBLEM: _cell_measurement_theta_min is missing
RESPONSE: ...
;
_vrf_CELL005_9004121
;
PROBLEM: _cell_measurement_theta_max is missing
RESPONSE: ...
;
_vrf_CELL006_9004121
;
PROBLEM: _cell_measurement_temperature is missing
RESPONSE: ...
;
_vrf_EXPT004_9004121
;
PROBLEM: _exptl_absorpt_coefficient_mu is missing
RESPONSE: ...
;
_vrf_EXPT005_9004121
;
PROBLEM: _exptl_crystal_description is missing
RESPONSE: ...
;
_vrf_EXPT009_9004121
;
PROBLEM: No crystal dimensions have been given.
RESPONSE: ...
;
_vrf_EXPT108_9004121
;
PROBLEM: The magnitudes of the crystal dimensions do not
RESPONSE: ...
;
_vrf_EXPT010_9004121
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PROBLEM: _exptl_crystal_colour (_pd_char_colour for powder) is missing
RESPONSE: ...
;
_vrf_DIFF003_9004121
;
PROBLEM: _diffrn_measurement_device_type is missing
RESPONSE: ...
;
_vrf_DIFF005_9004121
;
PROBLEM: _diffrn_measurement_method is missing
RESPONSE: ...
;
_vrf_DIFF007_9004121
;
PROBLEM: _diffrn_reflns_number is missing
RESPONSE: ...
;
_vrf_REFL001_9004121
;
PROBLEM: _reflns_number_total is missing
RESPONSE: ...
;
_vrf_REFL002_9004121
;
PROBLEM: _reflns_number_gt is missing
RESPONSE: ...
;
_vrf_REFL004_9004121
;
PROBLEM: _reflns_threshold_expression is missing
RESPONSE: ...
;
_vrf_DIFF008_9004121
;
PROBLEM: _diffrn_reflns_theta_max is missing
RESPONSE: ...
;
_vrf_DIFF013_9004121
;
PROBLEM: _diffrn_reflns_limit_h_min is missing
RESPONSE: ...
;
_vrf_DIFF014_9004121
;
PROBLEM: _diffrn_reflns_limit_h_max is missing
RESPONSE: ...
;
_vrf_DIFF015_9004121
;
PROBLEM: _diffrn_reflns_limit_k_min is missing
RESPONSE: ...
;
_vrf_DIFF016_9004121
;
PROBLEM: _diffrn_reflns_limit_k_max is missing
RESPONSE: ...
;
_vrf_DIFF017_9004121
;
PROBLEM: _diffrn_reflns_limit_l_min is missing
RESPONSE: ...
;
_vrf_DIFF018_9004121
;
PROBLEM: _diffrn_reflns_limit_l_max is missing
RESPONSE: ...
;
_vrf_DIFF019_9004121
;
PROBLEM: _diffrn_standards_number is missing
RESPONSE: ...
;
_vrf_DIFF020_9004121
;
PROBLEM: _diffrn_standards_interval_count and
RESPONSE: ...
;
_vrf_DIFF022_9004121
;
PROBLEM: _diffrn_standards_decay_% is missing
RESPONSE: ...
;
_vrf_REFI001_9004121
;
PROBLEM: _refine_ls_structure_factor_coef is missing
RESPONSE: ...
;
_vrf_REFI003_9004121
;
PROBLEM: _refine_ls_R_factor_gt is missing
RESPONSE: ...
;
_vrf_REFI005_9004121
;
PROBLEM: _refine_ls_wR_factor_ref is missing
RESPONSE: ...
;
_vrf_REFI007_9004121
;
PROBLEM: _refine_ls_goodness_of_fit_ref is missing
RESPONSE: ...
;
_vrf_REFI009_9004121
;
PROBLEM: _refine_ls_number_reflns is missing
RESPONSE: ...
;
_vrf_REFI010_9004121
;
PROBLEM: _refine_ls_number_parameters is missing
RESPONSE: ...
;
_vrf_REFI011_9004121
;
PROBLEM: _refine_ls_weighting_scheme is missing
RESPONSE: ...
;
_vrf_REFI015_9004121
;
PROBLEM: _refine_ls_shift/su_max is missing
RESPONSE: ...
;
_vrf_REFI017_9004121
;
PROBLEM: _refine_diff_density_max is missing
RESPONSE: ...
;
_vrf_REFI018_9004121
;
PROBLEM: _refine_diff_density_min is missing
RESPONSE: ...
;
_vrf_ATOM006_9004121
;
PROBLEM: _atom_site_U_iso_or_equiv is missing
RESPONSE: ...
;
_vrf_ATOM007_9004121
;
PROBLEM: _atom_site_aniso_label is missing
RESPONSE: ...
;
_vrf_GEOM001_9004121
;
PROBLEM: _geom_bond_atom_site_label_1 is missing
RESPONSE: ...
;
_vrf_GEOM003_9004121
;
PROBLEM: _geom_bond_distance is missing
RESPONSE: ...
;
_vrf_GEOM006_9004121
;
PROBLEM: _geom_angle_atom_site_label_2 is missing
RESPONSE: ...
;
_vrf_ABSTY01_9004121
;
PROBLEM: The absorption correction should be one of the following
RESPONSE: ...
;
_vrf_PLAT025_9004121
;
PROBLEM: Hmin..Lmax Data Incomplete or Missing ..........          ?
RESPONSE: ...
;
_vrf_PLAT027_9004121
;
PROBLEM: _diffrn_reflns_theta_full (too) Low ............       0.00 Deg. 
RESPONSE: ...
;
_vrf_PLAT029_9004121
;
PROBLEM: _diffrn_measured_fraction_theta_full Low .......       0.00      
RESPONSE: ...
;
_vrf_PLAT043_9004121
;
PROBLEM: Check Reported Molecular Weight ................       0.00      
RESPONSE: ...
;
_vrf_PLAT044_9004121
;
PROBLEM: Calculated and Reported Dx Differ ..............          ?
RESPONSE: ...
;
_vrf_PLAT050_9004121
;
PROBLEM: Absorption Coefficient mu Missing ..............          ?
RESPONSE: ...
;
_vrf_PLAT081_9004121
;
PROBLEM: No Maximum Shift/Error Given ...................          ?
RESPONSE: ...
;
_vrf_PLAT086_9004121
;
PROBLEM: Unsatisfactory S Value (Too Low or Not Given) ..       0.00      
RESPONSE: ...
;
_vrf_PLAT197_9004121
;
PROBLEM: Missing _cell_measurement_temperature ..........          ?
RESPONSE: ...
;
# end Validation Reply Form
If you wish to submit your CIF for publication in Acta Crystallographica Section C or E, you should upload your CIF via the web. If your CIF is to form part of a submission to another IUCr journal, you will be asked, either during electronic submission or by the Co-editor handling your paper, to upload your CIF via our web site.

PLATON version of 23/04/2007; check.def file version of 23/04/2007
Datablock 9004121 - ellipsoid plot

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